PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2009
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 631aa    MW: 70024 Da    PI: 7.6208
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2009genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23118219199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD
  Tp57577_TGAC_v2_mRNA2009 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGD 200
                               89****************************986445444..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Tp57577_TGAC_v2_mRNA2009 201 SIVFL--RAENGDLCVGIRRA 219
                               *****..4488999****997 PP
2Auxin_resp112.25.1e-37283366183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               a++ a ++  FevvY+Prast+eF+vkv++v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp++Wp+S+Wr+L+
  Tp57577_TGAC_v2_mRNA2009 283 AVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVQDPIHWPDSPWRLLQ 366
                               567888999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-38111222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29114220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21117218No hitNo description
SMARTSM010195.6E-20118220IPR003340B3 DNA binding domain
PfamPF023623.3E-21118219IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126118220IPR003340B3 DNA binding domain
PfamPF065073.5E-32283366IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MFVVMDSMEK TTEKCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GKVDFNKTRV  60
PPLIPCRISA MKYMADPETD EVYVKMRLTP LRENELDLEE DCFFGNNGLE GQEKPTSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTIIA KDMHGQCWKF RHIYRGTPRR  180
HLLTTGWSNF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGGIGGGITD QFSNSSSNWN  240
RVSPLFGGGS GFLCGNENRK SCGGVGGDDD LMRRVGSESV VEAVNCAING RSFEVVYYPR  300
ASTPEFCVKV SSVKSAMQIQ WCSGMRFKMP FETEDSSRIS WFMGTISSVH VQDPIHWPDS  360
PWRLLQVVWD EPDLLQNVKC VNPWLVELVS NMPNFNLSPF TPPRKKPRFI QDPYFHLINQ  420
LPMPTSSSSS LTSFSNINLL NYTNSSLCNI QDNSPNYSSS SSIQGARHAQ FGSNNNFPSD  480
LIPFNKLQQD MFLGNLSMSR FDKKQPIRPT CGPNNNNKNN VDLSCLLSVG NSGQSFKELS  540
NIEAKAPHKH QILLFGKLIH TEQQNNSSNV SKSGSLSEGI TSLKTSNVSS SSDPVENSSD  600
GGSPPWYKDQ QQHKTDLVGT ENVTTLCMAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-751138746388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487570.0AC148757.4 Medicago truncatula clone mth2-57e16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591894.10.0auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A396JT480.0A0A396JT48_MEDTR; Auxin response factor
STRINGAES621450.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]