PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2020
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 179aa    MW: 21042.9 Da    PI: 10.174
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2020genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF368.8e-121149442
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               n+s r++t+ kR++g+ K   E+ +LC+++++ ii+s+
  Tp57577_TGAC_v2_mRNA2020 11 VNESARKITYNKRKKGLNKSMAEITTLCGIDACAIIYSE 49
                              5999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002662.53E-17181No hitNo description
SMARTSM004326.7E-12159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.049149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-16280IPR002100Transcription factor, MADS-box
PfamPF003195.6E-131249IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKKKLKLAFM VNESARKITY NKRKKGLNKS MAEITTLCGI DACAIIYSEF HSEPEVWPFP  60
SEVQRIINKF KNHFEFEHGN KKKLSHETYL TRRVTKSKEQ LVKLEKNNLE MQKSLTLYXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVFYGILF CYFVLSFVSI LRCNDKSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2020
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460430.11e-51agamous-like MADS-box protein AGL80
STRINGXP_004500453.15e-49(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-28M-type_MADS family protein