PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20210
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 429aa    MW: 47569 Da    PI: 8.6642
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20210genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.19.7e-26150193144
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e
  Tp57577_TGAC_v2_mRNA20210 150 DPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVE 193
                                79***************************************987 PP
2QLQ47.36.4e-1780116137
                        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                s+F+ +Q+q+L+ Q+l+++y++ ++ vPp+Llq+i+k
  Tp57577_TGAC_v2_mRNA20210  80 SHFSISQWQELELQALIFRYMLVGASVPPDLLQPIRK 116
                                79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-980116IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.7E-1281115IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.62481116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.578150194IPR014977WRC domain
PfamPF088796.4E-22151193IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDFHLKQWRN QHESEEEQHS TKMPKLVLHH PAESHHQQSS VPPALPFLVP HSNTKLTNLS  60
DSITLPHSNI TNRSFPRIGS HFSISQWQEL ELQALIFRYM LVGASVPPDL LQPIRKSLLH  120
SSPYFLHHPL QHYRSTALLQ AGYWGRGAMD PEPGRCRRTD GKKWRCSRDV VTGQKYCERH  180
MHRGRNRSRK PVELPTPTSA GGGGGGGGSF SASQSLATAS LKSPFNLLHL NERFTNHQSC  240
RPYDLWPLLR LRLIFMMSHY WVQCSSYGTK NEDKSSLFES EDHVGGDGRS GGKMLRHFFD  300
DWPRSLQQES DNAENNNGGG SSSTCLSISM PGGNNNTSSS TSDIVSLKLS TGYGEEPCPR  360
NVNVGLETEQ QQQLQVNWVG GWNSGNQVSS MGGPLAEALR SSTTTSSPTS VLHQLPRSSA  420
SETSYISA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1709881e-156AC170988.5 Medicago truncatula chromosome 7 BAC clone mth2-53m12, complete sequence.
GenBankAC1968561e-156AC196856.3 Medicago truncatula chromosome 7 BAC clone mth2-33h9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494150.10.0growth-regulating factor 4
TrEMBLA0A1S2XV500.0A0A1S2XV50_CICAR; growth-regulating factor 4
STRINGXP_004494150.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.16e-77growth-regulating factor 4