PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20269
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 300aa    MW: 33774.1 Da    PI: 6.7954
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20269genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072432762154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Tp57577_TGAC_v2_mRNA20269 243 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                                469*****************************87 PP
2ELK25.53.1e-09197218122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK +L++++++++ ++++E++
  Tp57577_TGAC_v2_mRNA20269 197 ELKIELKQGFKSRIEDVREEIL 218
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-192771IPR005540KNOX1
PfamPF037901.0E-172970IPR005540KNOX1
SMARTSM012569.7E-2382137IPR005541KNOX2
PfamPF037913.3E-1685136IPR005541KNOX2
PROSITE profilePS512139.132197217IPR005539ELK domain
PROSITE profilePS5007111.71217280IPR001356Homeobox domain
SMARTSM003895.3E-11219284IPR001356Homeobox domain
SuperFamilySSF466894.71E-16219284IPR009057Homeodomain-like
CDDcd000861.66E-11220281No hitNo description
Gene3DG3DSA:1.10.10.604.1E-25224282IPR009057Homeodomain-like
PfamPF059201.1E-17237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQEPSLGMMH GGAGGGYGGD GGGGDNRQLK AEIATHPLYE QLLSAHVACL RVATPIDQLP  60
LIDAQLSQSH HLLRSYISQQ THSLSPHDRQ QLDNFLAQYL IVLCTFKEQL QQHVRVHAVE  120
AVMACRDIEN TLQALTGVSL GEGSGATMSD DEDEQMQMDY CLDNNQSGSG GDHDMMGLGP  180
LLPTESERSL MERVRQELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TSVLKNWWQQ  240
HAKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHS NSQSVTSLKS KRKRVYTFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13220276864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273293RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280590.0EF128059.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611171.10.0homeobox protein HD1
SwissprotQ9FPQ81e-168KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0H3W9R20.0A0A0H3W9R2_PEA; Class II knotted-1-like 4 homeobox transcription factor
STRINGAES941290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-162KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]