PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20352
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28939.8 Da    PI: 5.0163
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20352genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-1155782750
                               HHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF 27 LSvLCdaevaviifsstgklyeys 50
                               LS+LCd+ev vi+fsstgklye+s
  Tp57577_TGAC_v2_mRNA20352 55 LSILCDVEVGVIVFSSTGKLYEFS 78
                               9**********************8 PP
2K-box48.24.6e-171021871499
                      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                 +  + + a L++e+ +L++   ++ G++L+ L++keLq Le+qL +++ +++ kK+++l+eq+e+++ +e+++  e ++Lrk+
  Tp57577_TGAC_v2_mRNA20352 102 PQVVELDTAILQEEMAKLRSAYVRMTGKELDGLQIKELQDLENQLSEAILSVKGKKEQVLVEQLEKSRLQEQMAMAEIEDLRKQ 185
                                5666677889************************************************************************99 PP

                      K-box  98 le 99 
                                 +
  Tp57577_TGAC_v2_mRNA20352 186 EQ 187
                                75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.1052281IPR002100Transcription factor, MADS-box
PfamPF003192.8E-85577IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-115593IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.01102192IPR002487Transcription factor, K-box
PfamPF014869.9E-12107185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFGVEEKKEI VKVEEKKKKK RMGSRDIEIE KTDNLIXXXX XXXXXXXXXX XXXXLSILCD  60
VEVGVIVFSS TGKLYEFSRP SMEHILSRYG AEQQQPNAQP PPQVVELDTA ILQEEMAKLR  120
SAYVRMTGKE LDGLQIKELQ DLENQLSEAI LSVKGKKEQV LVEQLEKSRL QEQMAMAEIE  180
DLRKQEQKAV VETETVCKQL RNCEEIENKK KSEAIADTSL RYVCNNSELA FHRPCFLQYP  240
GFMILAQCTP TT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467596.18e-59agamous-like MADS-box protein AGL18
TrEMBLA0A072VJL72e-57A0A072VJL7_MEDTR; MADS-box transcription factor
STRINGXP_004513865.12e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.19e-32AGAMOUS-like 15