PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20355
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 150aa    MW: 17018 Da    PI: 9.8118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20355genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000144365123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ykC  C+ksFs+   L  H ++H
  Tp57577_TGAC_v2_mRNA20355 43 YKCDLCSKSFSSGNALGGHKSSH 65
                               9***********99999998888 PP
2zf-C2H213.80.0001784104323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C+ C+k Fs++  L  H+r+H
  Tp57577_TGAC_v2_mRNA20355  84 CQVCKKFFSSNKALYGHMRSH 104
                                77******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-44069IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.39E-741104No hitNo description
PfamPF139121.4E-114368IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.9674370IPR007087Zinc finger, C2H2
SMARTSM003550.0674365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6681109IPR007087Zinc finger, C2H2
SMARTSM003550.9982104IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-583105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MRKKVTPSST FHNPFSSYNY HDDNNNKHTK INAANLQGST RMYKCDLCSK SFSSGNALGG  60
HKSSHKKQKT HHHDDIEKQE HSCCQVCKKF FSSNKALYGH MRSHKRDGKK VIHPLPTISS  120
SLEHNNDVDE DRFLLRASVL DLSNYFPQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189393.11e-21uncharacterized protein LOC113786250
TrEMBLA0A2K3LXB13e-70A0A2K3LXB1_TRIPR; C2H2 zinc finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-06C2H2-like zinc finger protein