PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20431

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 224aa MW: 25750.2 Da PI: 6.154

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20431	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.4	1.7e-33	12	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeeke 57 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y+++Pw+L+ ++ e ++ Tp57577_TGAC_v2_mRNA20431 12 LPPGFRFDPTDEELVVHFLQRKATLLPCHP-HVIPDLHLYSYDPWQLHGilvytiyylfvfflavdysgrsaivvgRALLEGNK 94 79***********************999.89**********9558999999999999999888877765533347889 PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 wy++s+r +nr+t++gyWkatg +++v+++ ++++vg+kk +vf+ g + +g kt+W+m+e+ l Tp57577_TGAC_v2_mRNA20431 95 WYYYSRRT--------QNRVTDNGYWKATGMEEAVICStNNKKVGMKKHFVFHVGeSPASGIKTNWIMQEFCL 159 99999874........589********999998868899******883556899*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-38	9	57	IPR003441	NAC domain
PROSITE profile	PS51005	40.77	12	191	IPR003441	NAC domain
Pfam	PF02365	4.2E-22	13	158	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-38	85	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGDKNDIYNV NLPPGFRFDP TDEELVVHFL QRKATLLPCH PHVIPDLHLY SYDPWQLHGI 60 LVYTIYYLFV FFLAVDYSGR SAIVVGRALL EGNKWYYYSR RTQNRVTDNG YWKATGMEEA 120 VICSTNNKKV GMKKHFVFHV GESPASGIKT NWIMQEFCLS DSASSSAKSS KRKSKPIKDY 180 SKWVICRVYE QNEDGDDGMD QLSYLDEVFL SLDDLDEISL PNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-31	3	192	11	169	NAC domain-containing protein 19
3swm_B	5e-31	3	192	11	169	NAC domain-containing protein 19
3swm_C	5e-31	3	192	11	169	NAC domain-containing protein 19
3swm_D	5e-31	3	192	11	169	NAC domain-containing protein 19
3swp_A	5e-31	3	192	11	169	NAC domain-containing protein 19
3swp_B	5e-31	3	192	11	169	NAC domain-containing protein 19
3swp_C	5e-31	3	192	11	169	NAC domain-containing protein 19
3swp_D	5e-31	3	192	11	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20431

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019440373.1	1e-98	PREDICTED: NAC domain-containing protein 104-like
Refseq	XP_019440374.1	1e-98	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-70	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2K3LLY1	1e-126	A0A2K3LLY1_TRIPR; NAC domain-containing protein
STRING	GLYMA08G19300.1	1e-88	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-69	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20431

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]