PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20534
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 428aa    MW: 47586.8 Da    PI: 5.2908
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20534genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11e-20115214399
                                EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                k+l++sd+++ g +++p k+a+ +        +++   +++l++ d +g++We+++ yr++++r+++t +W++Fv+ ++L  gD
  Tp57577_TGAC_v2_mRNA20534 115 KTLSQSDANNGGAFSVPSKCAKLIfppldleaKLP---TQELSIADVHGNVWEFRHVYRGNPKRHMFTHNWSQFVDKKKLVGGD 195
                                8999*****************888****9753333...458******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                +++F+  ++s +e +v+++r 
  Tp57577_TGAC_v2_mRNA20534 196 SLLFM--KNSAGEIYVGIRRV 214
                                *****..779********985 PP
2Auxin_resp48.83e-17233308175
                 Auxin_resp   1 aahaastksvFevvYnPrasts.eFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWp 75 
                                a++ a+++++FevvY+P a    +Fvv ++ ve+a+k+++  GmR+k +++++dss   + Gt++ + + ++  W+
  Tp57577_TGAC_v2_mRNA20534 233 AVKLAEKNEAFEVVYYPTADDGdNFVVDANVVEDAMKINWNCGMRVKRSLNNDDSSISLQHGTITNLCAPSNRPWH 308
                                678999************987527**********************************9******99986665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-24112215IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-12113215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124113215IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-28114215IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-18115213No hitNo description
PfamPF023621.9E-18115213IPR003340B3 DNA binding domain
PfamPF065074.2E-14233308IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MALEQPSRVD PKIWQSCAGD TVKIPKLHSK VYYFPLGHLE HANPTPNTES LSLVNSYRPF  60
IPCIISSVDL LADPQTDEVF TKLLLTPVID GSTVEPFEVH DDDDGGDNDV VSAGKTLSQS  120
DANNGGAFSV PSKCAKLIFP PLDLEAKLPT QELSIADVHG NVWEFRHVYR GNPKRHMFTH  180
NWSQFVDKKK LVGGDSLLFM KNSAGEIYVG IRRVKKFATP AVVQKKESVV IEAVKLAEKN  240
EAFEVVYYPT ADDGDNFVVD ANVVEDAMKI NWNCGMRVKR SLNNDDSSIS LQHGTITNLC  300
APSNRPWHML QVYATHNVKW DEAKVSENTI QVSPWQIEYY SNIPSLHLQC PPTKKLKVTE  360
DPAALLSDIQ GDSSIPIIEF QHSTMEKFVD PNNCDTKNVT RSFKLFGTII QVGSDLPNSE  420
IKEDDSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-55933851388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462902.11e-150auxin response factor 17
TrEMBLA0A2Z6MVQ80.0A0A2Z6MVQ8_TRISU; Auxin response factor
STRINGAES967411e-143(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-88auxin response factor 17