PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20543
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 343aa    MW: 38242.4 Da    PI: 10.0376
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20543genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44e-2126127299
                                EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                fk+lt+sd+++ g +++p  +a ++      + k++  ++l+++d +g++W++++iy+++++r+++t+GW++Fv+ ++L +gD+
  Tp57577_TGAC_v2_mRNA20543  26 FKTLTRSDANNGGAFSVPCGCAIKIfppldlKAKPAPFQELSFTDVHGEVWKFRHIYTGTPQRHLITSGWSKFVDKKKLVVGDS 109
                                69***************************9966777778********************************************* PP

                                EEEEE-SSSEE..EEEEE-S CS
                         B3  80 vvFkldgrsefelvvkvfrk 99 
                                ++F   ++s ++ +++++rk
  Tp57577_TGAC_v2_mRNA20543 110 LIFL--KNSAGRIFIGIRRK 127
                                ****..779999*****996 PP
2Auxin_resp41.84.5e-15140204781
                 Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                                 +++FevvY+P a+  +Fvv ++ ve+a+k+++  GmR+k+ ++++ s      Gt++ +s+  p   +n +Wr+
  Tp57577_TGAC_v2_mRNA20543 140 XNKAFEVVYYPTAGGDNFVVDANVVEDAMKINWNCGMRVKFPLNNDSS-----KGTISNLSA--P---SNRPWRL 204
                                5789***************************************98755.....477777777..3...3445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-2324127IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-1225128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-2726127IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-1726126No hitNo description
PfamPF023625.0E-1926127IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88465128IPR003340B3 DNA binding domain
PfamPF065072.9E-12140205IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSLNVVNTPA PYMNHTQHNV QVVSSFKTLT RSDANNGGAF SVPCGCAIKI FPPLDLKAKP  60
APFQELSFTD VHGEVWKFRH IYTGTPQRHL ITSGWSKFVD KKKLVVGDSL IFLKNSAGRI  120
FIGIRRKFDI SRSXXXXXXX NKAFEVVYYP TAGGDNFVVD ANVVEDAMKI NWNCGMRVKF  180
PLNNDSSKGT ISNLSAPSNR PWRLLQVYIF VKEVPHSLHI IIFSILILVV NWDEPKVSEN  240
TKRVNPWMVE PIFDIAELHL HFPQIKRLRV DPGFALSRST ERESASTHNC KASKVSPSSI  300
KLFGRIIKLS AGGNLPDSGI NEDGCKGCNE IEAINKTMKI TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-3222252120355Auxin response factor 1
4ldw_A3e-3222252120355Auxin response factor 1
4ldw_B3e-3222252120355Auxin response factor 1
4ldx_A3e-3222252120355Auxin response factor 1
4ldx_B3e-3222252120355Auxin response factor 1
4ldy_A3e-3222252120355Auxin response factor 1
4ldy_B3e-3222252120355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20543
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462902.19e-78auxin response factor 17
TrEMBLA0A2K3N5E00.0A0A2K3N5E0_TRIPR; Auxin response factor
STRINGAES967412e-74(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-54auxin response factor 17