PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20906

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 211aa MW: 24124.3 Da PI: 12.0881

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20906	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.8	3.3e-33	45	105	5	65
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+qa+pai++ tg Tp57577_TGAC_v2_mRNA20906 45 SRSTKDRHTKVNGRGRRVRMPPLCAARVFQLTRELGHRSDGETIEWLLRQAEPAIIAVTGX 105 579********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-29	47	106	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSSQVVFQTF SQSETKPSTV STTTVATTSS DPNAQLTTVK RKTSSRSTKD RHTKVNGRGR 60 RVRMPPLCAA RVFQLTRELG HRSDGETIEW LLRQAEPAII AVTGXXXXXX XXXXXXXXXX 120 PVRFQQPRRR LLSPGRLCPA MLLRRCHLLV PAVVECLLLL LSRYSSRVAG LIYVRRLEWS 180 MLYRIGTIIC RSRRCCCNRV RWRRISKKNL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20906

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC153725	1e-47	AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028776076.1	2e-43	transcription factor TCP11
TrEMBL	A0A2K3PDU8	1e-65	A0A2K3PDU8_TRIPR; Transcription factor TCP15

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-25	TCP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20906