PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA20996

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 336aa MW: 36077.6 Da PI: 5.7623

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA20996	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	76.2	4.3e-24	253	315	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+ Tp57577_TGAC_v2_mRNA20996 253 DRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSEN 315 689**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	4.1E-29	1	94	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	8.8E-9	116	228	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.5E-18	250	312	No hit	No description
SMART	SM00338	7.6E-22	253	317	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-21	254	315	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.369	255	318	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-11	256	312	No hit	No description
CDD	cd14702	7.39E-24	258	308	No hit	No description
PROSITE pattern	PS00036	0	260	275	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGTKEDSTTK PSKSSSSTQE VPTVPPPYPD WSNSMQAYYN PGAAPPPYYA STVAPPNPHP 60 YMWGGQHPMM APYGTPVPYP AMYPPGNIYA HPSMVVTPSA MHQTTEFEGK GPEGKDKDSS 120 KKSKGTSTNT SAKAGESAKA GSGSGNDGFS QSGESGSEGS SNGSDENQQE SARNKKGGFD 180 LMLVNGANVQ NNTTGPISQS PVPGNPVVSM PATNLNIGMD LWNASPASAE AAKMRHNQSS 240 VPGAGEQWMQ QDDRELKRQK RKQSNRESAR RSRLRKQAEC EELQKRVEAL GGENRTLREE 300 LQKLSEECEK LTSENNSIKE ELEQLCGPEV VANLE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	275	RRSRLRK
2	269	276	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA20996

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ911778	0.0	HQ911778.1 Medicago sativa cultivar Zhongmu No.1 transcription factor bZIP (ZIP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003629480.1	0.0	G-box-binding factor 1 isoform X1
Refseq	XP_024629610.1	0.0	G-box-binding factor 1 isoform X1
Swissprot	P42774	1e-103	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A2K3P1D9	0.0	A0A2K3P1D9_TRIPR; G-box-binding factor 1-like protein
STRING	AET03956	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	2e-47	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA20996

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]