PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20997
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 330aa    MW: 37542.2 Da    PI: 6.2815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12192217126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                y   +C+++ +tG+C yGd+CkF+H+
  Tp57577_TGAC_v2_mRNA20997 192 YQPDICKDYKETGYCGYGDSCKFMHD 217
                                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9190222IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878191219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12192222IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.7E-13265311IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139205.4E-8269311No hitNo description
SuperFamilySSF578508.43E-13269312No hitNo description
PROSITE profilePS5008910.188270308IPR001841Zinc finger, RING-type
CDDcd001622.50E-7270311No hitNo description
SMARTSM001849.9E-4270307IPR001841Zinc finger, RING-type
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDSEPKSAE NNQQTEQVCS FFRKPVNKKN IRKRTIDNED NEDDSNNEES LMHVQKKNTK  60
TDNKLFFSSG SSKSSASSEQ KEESEKHGFH FESSKEIQVQ HDSKATATLE TETDFSNDAR  120
ARRERALKQA SETLKGKGTG SEDGKLYKGM NNYTDHKAGF RREHTISGEK AGGSHGPLRA  180
SAHIRVSARF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQMEKE WEEAEKERRM  240
RLAAGEDAEE EGANLNDDED DDDDALPFAC FICRNPFVDP VSTKCKHYFC EHCALKHHAK  300
NKKCFVCNQP TLGIFNVAHE IRKKMAEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-661532511317RING finger protein 113A
5z58_M4e-661532511317RING finger protein 113A
6ff4_t4e-661532511317RING finger protein 113A
6ff7_t4e-661532511317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183074.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_020971264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_025632420.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A445AEU90.0A0A445AEU9_ARAHY; Uncharacterized protein
STRINGAES821620.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-140C3H family protein