PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21046
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 127aa    MW: 14981.8 Da    PI: 5.772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21046genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-19344346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +W++eE+++l++a+k+ G++ W+ Iar+++ gRt++ +k+rw++
  Tp57577_TGAC_v2_mRNA21046  3 PWSEEEEKILIKAHKKVGNK-WTEIARMLP-GRTENAIKNRWNT 44
                               8*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.535150IPR017930Myb domain
SMARTSM007172.2E-14148IPR001005SANT/Myb domain
PfamPF002491.3E-17244IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-16253IPR009057Homeodomain-like
CDDcd001672.45E-12344No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
KAPWSEEEEK ILIKAHKKVG NKWTEIARML PGRTENAIKN RWNTAIRSHN RKNRKNRCNS  60
SKNTILWKYI NEINAKEVDE KENHEDLTTL EDEQPSGYEF ENGMEFFVEV PIKEEMDFME  120
MINNSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A5e-17147551MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A5e-17147551MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.13e-28transcription factor MYB98
TrEMBLA0A2K3MH508e-61A0A2K3MH50_TRIPR; MYB protein
STRINGAES786304e-29(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-16myb domain protein 98