PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA21215

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 126aa MW: 14064.1 Da PI: 11.0927

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA21215	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	8.9e-14	51	90	1	40
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r +WT eE++l++++ k G+g+Wk I+r+ k+Rt+ q+ Tp57577_TGAC_v2_mRNA21215 51 RSAWTDEEHKLFLKGLKHIGKGNWKEISRRYVKTRTPTQV 90 789**********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.471	46	102	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-10	49	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-9	50	91	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.7E-11	50	91	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-5	50	100	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-10	51	90	IPR001005	SANT/Myb domain
CDD	cd00167	2.86E-9	53	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MLFGVKITIA TNNNNNLSQH QQTTAQVSIS TDASTVSDNV HASTGSSKYK RSAWTDEEHK 60 LFLKGLKHIG KGNWKEISRR YVKTRTPTQV AXXXXXXXXX XXXLFVIRTR IAAATGNLVS 120 LILQLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA21215

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027187577.1	1e-23	transcription factor MYB1R1 isoform X1
TrEMBL	A0A2K3LW19	5e-25	A0A2K3LW19_TRIPR; Transcription factor MYB 1R1-like protein
STRING	XP_004489944.1	4e-23	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3213	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	2e-24	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA21215