PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21233
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19827.3 Da    PI: 9.8708
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21233genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391.1e-121050242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +i  ++ r+ t+ kR +g++KK +E+ +LC+++++ i+f +
  Tp57577_TGAC_v2_mRNA21233 10 FITKDTTRKATYKKRVKGLMKKLNEITTLCEIKACAIVFNP 50
                               78999*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.647149IPR002100Transcription factor, MADS-box
CDDcd002663.63E-20285No hitNo description
SuperFamilySSF554554.06E-19395IPR002100Transcription factor, MADS-box
PfamPF003193.2E-131050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGGKKVKLAF ITKDTTRKAT YKKRVKGLMK KLNEITTLCE IKACAIVFNP EILEPQIWPS  60
IEGVQSVVNQ FIHVPKFDRG RKMLNHESYL KEKIEKLSEK LTKKTKENRK MKMTIQMYHF  120
LEKGNIEGLS TVDHDDLTYV IDEKMEEINM KMMEMEINDQ RAPRFVNDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKATYKKRVKGLMKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21233
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616031.11e-75agamous-like MADS-box protein AGL80
TrEMBLA0A2K3NAD31e-119A0A2K3NAD3_TRIPR; Agamous-like mads-box protein agl80-like
STRINGAES989894e-75(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-25AGAMOUS-like 80