PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21288
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 141aa    MW: 16246 Da    PI: 5.7999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21288genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-06119141123
                                CHHHHHHHHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeL 23 
                                +r++h ++Er+RR+++N+ ++ L
  Tp57577_TGAC_v2_mRNA21288 119 QRMTHIAVERNRRKQMNEYLAVL 141
                                79****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.33E-5110141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-4117141No hitNo description
Gene3DG3DSA:4.10.280.103.1E-5117141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.496118141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTLEAVVFPQ DILCKDYLYS LVEIDTNKSE GSCSHNNYGC QTNEDLFGII NNNINQNIYA  60
NWDSSSPSMM QNGKDQSDSN SSLETSKLPQ FDVEATTTSR RRKRRRATSP KKEEEIESQR  120
MTHIAVERNR RKQMNEYLAV L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105RRRKRRR
2101105RKRRR
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21288
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615193.23e-39transcription factor bHLH96
TrEMBLA0A2K3M4169e-76A0A2K3M416_TRIPR; Transcription factor bHLH96-like protein
TrEMBLA0A2K3N9N53e-74A0A2K3N9N5_TRIPR; Transcription factor bHLH96-like protein
STRINGGLYMA14G35560.15e-37(Glycine max)
STRINGAES981511e-36(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-15bHLH family protein