PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21380
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27750.7 Da    PI: 9.4317
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21380genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.99.7e-32959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Tp57577_TGAC_v2_mRNA21380  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                               79***********************************************95 PP
2K-box108.57.6e-3691188299
                      K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                                ++ss++ ++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++L++keL+qLe++Le+++++iRskK+e+ll++ie+ qk+e 
  Tp57577_TGAC_v2_mRNA21380  91 DHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREI 174
                                55677779999************************************************************************* PP

                      K-box  86 elqeenkaLrkkle 99 
                                el++en +Lr+k++
  Tp57577_TGAC_v2_mRNA21380 175 ELENENLCLRTKIN 188
                                ************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.048161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-30270IPR002100Transcription factor, MADS-box
CDDcd002657.50E-40292No hitNo description
PRINTSPR004045.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2699187IPR002487Transcription factor, K-box
PROSITE profilePS5129715.313103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
KYVSSFLYLF CMATSNYIRS TIDRYKKACS DHSSTTTTTE INAQYYQQES AKLRQQIQML  120
QNSNRHLMGD ALSTLTVKEL KQLENRLERG ITRIRSKKHE MLLAEIEYFQ KREIELENEN  180
LCLRTKINDV ERLPQVNMVS GQELNAIQAL ASRNFFDPNM IEAETSYHQS DKKILHLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19159159Myocyte-specific enhancer factor 2B
1tqe_Q1e-19159159Myocyte-specific enhancer factor 2B
1tqe_R1e-19159159Myocyte-specific enhancer factor 2B
1tqe_S1e-19159159Myocyte-specific enhancer factor 2B
6c9l_A1e-19159159Myocyte-specific enhancer factor 2B
6c9l_B1e-19159159Myocyte-specific enhancer factor 2B
6c9l_C1e-19159159Myocyte-specific enhancer factor 2B
6c9l_D1e-19159159Myocyte-specific enhancer factor 2B
6c9l_E1e-19159159Myocyte-specific enhancer factor 2B
6c9l_F1e-19159159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598035.11e-148agamous-like MADS-box protein AGL11
RefseqXP_024633663.11e-148agamous-like MADS-box protein AGL11
SwissprotF6I4571e-129AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLG7IYF41e-147G7IYF4_MEDTR; MADS-box transcription factor
STRINGAES682861e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]