PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21446
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YB
Protein Properties Length: 452aa    MW: 50409 Da    PI: 5.1284
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21446genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB76.15.4e-2441124386
                      NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                                ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re+r+ti+++ +l al+ lGf dy+e++ + 
  Tp57577_TGAC_v2_mRNA21446  41 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGDYIEEVYAA 124
                                6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-3738170IPR009072Histone-fold
SuperFamilySSF471134.37E-3442172IPR009072Histone-fold
PfamPF008084.7E-2044109IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PfamPF047595.9E-57292450IPR006460Protein of unknown function DUF617, plant
TIGRFAMsTIGR015701.4E-52303451IPR006460Protein of unknown function DUF617, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
SCPFTADLQS VDFFLPTFSS SYSIDRDKKN MEPMDIVAKS KEDASLPKAT MTKIIKEMLP  60
PDVRVARDTQ DLLIECCVEF INLVSSESNE VCNREERRTI APEHVLKALG VLGFGDYIEE  120
VYAAYEQHKT ETLQDNGKGA KWSGAAEMTE EQALAEQQRM FAEARARMNG GTISSNQPDA  180
DQNLDWSGSI QVRWFFVDRL SFVLLSDMNS VMARSSNNMS SKRHFHWTNK VGTEDDEVHT  240
SESFSTLIQK EDKKEGDKVV DPEVSSVAKA AAHATRRKLR AVAISRLRSA LTVFGKNRSS  300
TPFDPTSQEA FFIELATPIS GLVREMASGS VRIALECDKE KEKENEEKKG LRLLEEPLWR  360
TYCNGKKCGF ANRRECGQKE WNILKAVEPI SMGAGVIPGT GDGSVAGPEG ELMYMRAKFE  420
RVVGSRDSEA FYMMNPDSNG VPELSIYLLR V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-314216512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182740.0JQ918274.1 Medicago truncatula nuclear trancription factor Y subunit B1 (NF-YB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632300.11e-143protein MIZU-KUSSEI 1
TrEMBLA0A498I5A80.0A0A498I5A8_MALDO; Uncharacterized protein
STRINGXP_004488352.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.25e-86nuclear factor Y, subunit B13