PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2146
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 834aa    MW: 98581 Da    PI: 6.7361
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2146genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-06217236625
                               -SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                               C+f+++t  C++GdrC++ H
  Tp57577_TGAC_v2_mRNA2146 217 CPFHLKTAACRFGDRCSRVH 236
                               ******************99 PP
2zf-CCCH28.13.5e-09366393126
                               --S---SGGGGTS..--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                               +k ++C  ++++G  tC++G  C+F+H+
  Tp57577_TGAC_v2_mRNA2146 366 WKVAICGEYMKSGykTCSHGTACNFIHC 393
                               899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.934211239IPR000571Zinc finger, CCCH-type
SMARTSM0035618212238IPR000571Zinc finger, CCCH-type
PRINTSPR018481.5E-31217236IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.5E-31236256IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3309.7E-23242361IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003612.0E-4282359IPR003954RNA recognition motif domain, eukaryote
SuperFamilySSF549287.41E-15295363IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.047300363IPR000504RNA recognition motif domain
PRINTSPR018481.5E-31320342IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.5E-31347371IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.502365395IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025365394IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6366393IPR000571Zinc finger, CCCH-type
PRINTSPR018481.5E-31385397IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MEIEEERKKL ESSSSEMMVR KEKRKAMKKM KRKERRKEIA EKERLEEEAL LNDPELQRKM  60
LLLEQEEAER IERDRIAFLE REKDWIIKQQ QREEEEEEDD DKFNNTDNKE EEEEEEEEEE  120
EEEEEEDEED GPPEIIWQGN EIIIKKKKKK VKSPNLLLLH HHQEHDVVTN NRPTSNPFPP  180
ESPSQTHSNS ALLLLENNSN VAQQLPNFGT ELDKSHCPFH LKTAACRFGD RCSRVHFYPD  240
KSCTILIKNM YNGPGLAWEQ DEGLEIHFSG GDSSFRLSLL QLKHITCYEE VERCFEEFYE  300
DVHTEFLKFG EIVNFKVCKN GSFHLRGNVY VQYKLLDSAL LAYKSVNGRY FAGKQVNCKF  360
VNLTRWKVAI CGEYMKSGYK TCSHGTACNF IHCFRNPGGD YGWADSDKPP PKFWVKEMIA  420
LFGHSDDDHG NFSALKHSSN VPKTDSDRYH SRRSRSREKG QLNGGRSGRR KEEDESKQRT  480
LDEEWNTDFK DSHKRKCRNR TPDTDSNREW LEEVDREKYH EHTRKSSFRR NKDDSSRRHE  540
EYSDVDRVTI NRGNKKQHDR KGRNSRKWNR DSRDWIYEAG SDEDSDSDRK RNRSSQRKGS  600
RHHSRGNSNV TDESESDIDR EHEEYSDADW DAMTRDNEKN HGSKGRNSQK LNMDSRYRVY  660
EAGSDEDRHR KRHHSSQMKK SRRRSRGSSY VIDEFDKDRG EMETHDYSRE SSRHRRSSLQ  720
DYCEDHENEN DKIDGGWSQK ETDQRAYHPE KKRLRHQKKL DSTNGDNKNG LKSPSITFLI  780
LSPSLICLYL SLAFSLFLLF LFILIFLFLL TVVFFEGRKM MIHPHKANDH DVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A5e-262083929167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1630RKKLESSSSEMMVRKEKRKAMKKMK
22735KKMKRKERR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405490.0AC140549.12 Medicago truncatula clone mth2-28o14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631916.10.0zinc finger CCCH domain-containing protein 5 isoform X2
TrEMBLG7IN580.0G7IN58_MEDTR; Zinc finger CCCH domain protein, putative
STRINGXP_004485426.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-125C3H family protein