PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21656
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 230aa    MW: 24881.4 Da    PI: 8.2697
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21656genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.8e-312103197
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++p+ +r+++++sl++eA+ r+ +Pv+Gavg+
  Tp57577_TGAC_v2_mRNA21656   2 SCNGCRVLRKGCSESCILRPCIqwidtPEAQGHATVFVAKFFGRADLMSFISNVPKPQRPALFQSLLFEACGRTVNPVNGAVGL 85 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelall 97 
                                +++++++++q+++e++l+
  Tp57577_TGAC_v2_mRNA21656  86 LWTGNWHVCQAAVETVLR 103
                                ************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6081107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPKPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPI PELLGSDAVA  120
STVDDSSEGE VTCNDARRSR DVKSSFPFMS SGGKRKRSGE VAKVQATTDL NLRLMPQNAL  180
TNGCRKEIRR SGTPSMNSEE SVTTMTCLES GIGDHYVHDG DRKVLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1430320.0BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611614.11e-148LOB domain-containing protein 39
SwissprotQ9SN232e-82LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2K3PFF41e-169A0A2K3PFF4_TRIPR; LOB domain-containing protein
STRINGAES945721e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-82LOB domain-containing protein 38