PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21726
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 185aa    MW: 22051.6 Da    PI: 7.6175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-173276248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               g+ + eE+ l++++ +q+G++ W++Iar+++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA21726 32 GPYSVEEERLIIQLQQQWGNK-WSKIARRLP-GRTDNEIKNYWRTHL 76
                               78999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.413125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-10838IPR009057Homeodomain-like
SuperFamilySSF466891.8E-231182IPR009057Homeodomain-like
PROSITE profilePS5129425.0052680IPR017930Myb domain
SMARTSM007172.1E-163078IPR001005SANT/Myb domain
PfamPF002491.7E-153276IPR001005SANT/Myb domain
CDDcd001671.30E-113376No hitNo description
Gene3DG3DSA:1.10.10.603.8E-213976IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MWPKSQLHCL RRSGKSCRLR WLNYLRPNLK HGPYSVEEER LIIQLQQQWG NKWSKIARRL  60
PGRTDNEIKN YWRTHLQKRV QVEQEGEFMN KVESVAHDFN KKNIDVVSNS EGETKESSVD  120
SFPLSDWGMG NSPYENRIFD WIVELQNGYS DKEKELGRDR KSTHEYNPQQ EYDTWDYSGI  180
LWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-1728027105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-1728027105C-Myb DNA-Binding Domain
1msf_C4e-1728027105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21726
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468124.21e-98transcription factor MYB27
SwissprotQ9SCP17e-42MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A396JN592e-97A0A396JN59_MEDTR; Putative transcription factor MYB-HB-like family
STRINGGLYMA10G06680.17e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-40myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]