PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA21733

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 105aa MW: 12037.8 Da PI: 4.861

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA21733	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	70	101	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W +eEde+l v++lG ++W++ a+ g Tp57577_TGAC_v2_mRNA21733 70 KGTWLQEEDEQLTSFVTRLGERRWDSLAKVAG 101 799************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-8	63	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-5	65	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.38	65	104	IPR017930	Myb domain
Pfam	PF00249	1.7E-5	70	100	IPR001005	SANT/Myb domain
CDD	cd00167	3.59E-4	72	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MNREGIVMLG IIQYRILVII SAKERSHVLP DMSSSTYSLG IDSIKDEITL FMNVETYKYQ 60 EAMQGENLRK GTWLQEEDEQ LTSFVTRLGE RRWDSLAKVA GMYL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA21733

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ468098	6e-45	KJ468098.1 Indigofera tinctoria chloroplast, complete genome.
GenBank	KJ788285	6e-45	KJ788285.1 Trifolium glanduliferum chloroplast, complete genome.
GenBank	KJ788292	6e-45	KJ788292.1 Trifolium strictum chloroplast, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	2e-10	myb domain protein 27

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA21733