PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21737
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18969.6 Da    PI: 9.4728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21737genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141252444
                               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                ++s+r  tf+kR++g++KK  E+ +LC++e + iifs+++
  Tp57577_TGAC_v2_mRNA21737 12 IDNSKRRATFIKRKKGLIKKIDEITTLCGVEGCAIIFSQNN 52
                               56788889******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.044152IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18161IPR002100Transcription factor, MADS-box
CDDcd002661.98E-22262No hitNo description
PRINTSPR004043.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTRRKVKLAY IIDNSKRRAT FIKRKKGLIK KIDEITTLCG VEGCAIIFSQ NNPQPAIWPS  60
PSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XCDWKCARDG EQHWCNADTT FVIGLHDQQQ FW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-22M-type_MADS family protein