PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21758
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 306aa    MW: 33673.6 Da    PI: 7.9928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21758genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025227249123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  F++   L  H+r+H
  Tp57577_TGAC_v2_mRNA21758 227 HECSICGAEFTSGQALGGHMRRH 249
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-8135158No hitNo description
PfamPF139126.1E-10136160IPR007087Zinc finger, C2H2
SMARTSM003550.56136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576674.91E-8222249No hitNo description
PfamPF139121.3E-12227251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743227254IPR007087Zinc finger, C2H2
SMARTSM003550.01227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLSKMDMEGI LSTKEHGNDA SHLIKGKRTK RLRQLSPCTV ATTTVTSSCS SATGGGGSFS  60
STTFDDTEQE EEADMANCLI LLAQGRTGEG GGGGGENQYR RAQSHHYDNK HQQQQMDGYN  120
KIATTEKATK NGFESYECKT CNRFFHSFQA LGGHRASHKK PKMKEEKQSS PSQPRQIVTT  180
TGEFQEENNK IDTKNITTIN PLVPPVSLEL RCGVNINFKP NKLNKIHECS ICGAEFTSGQ  240
ALGGHMRRHR ASIDKSNNKN NNVVAFEAVH VKSRNILELD LNFPAPEEDI SDSTFQFPAM  300
VGCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464844.21e-165zinc finger protein ZAT5
TrEMBLA0A2K3NX330.0A0A2K3NX33_TRIPR; Zinc finger protein ZAT5-like
STRINGXP_004487558.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-44C2H2 family protein