PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21812
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family YABBY
Protein Properties Length: 266aa    MW: 30211.2 Da    PI: 6.0299
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21812genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY200.56.9e-62552152169
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeen 81 
                                ++f+ +eq+CyvqC+fCntil+vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+  hl+++           +e++
  Tp57577_TGAC_v2_mRNA21812  55 HLFDLPEQICYVQCGFCNTILMVSVPCNSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLTHLEQKE------SSSPDEDA 132
                                7899**********************************************99977777777777754332......22222222 PP

                      YABBY  82 lksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                                 k  + +++s +t+      + +ed+ +p +  v++PPekrqr Psaynrfikeei+r+ka+ Pd++h+eafs+aaknWa  P+
  Tp57577_TGAC_v2_mRNA21812 133 NKGLNNNSSSMMTYS-----DCEEDDVIPITNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAQHPDMAHKEAFSTAAKNWANCPP 211
                                222222222222222.....4577888898888*************************************************** PP

                      YABBY 166 ihfg 169
                                i f+
  Tp57577_TGAC_v2_mRNA21812 212 IQFQ 215
                                *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.4E-6460214IPR006780YABBY protein
SuperFamilySSF470952.36E-9158211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.5E-6163211IPR009071High mobility group box domain
CDDcd013901.97E-5170211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
LIDYVFNFNY KCFIVSKELH YIFIYLIPLL SLPFSHTNTH HSSPHSKNLM STLNHLFDLP  60
EQICYVQCGF CNTILMVSVP CNSLSMVVTV RCGHCTSLLS VNMMKASFVP FHLLASLTHL  120
EQKESSSPDE DANKGLNNNS SSMMTYSDCE EDDVIPITNV VNKPPEKRQR TPSAYNRFIK  180
EEIKRLKAQH PDMAHKEAFS TAAKNWANCP PIQFQGDEES CNQTDQLVDL DSQVDPHDAE  240
VNEEEHGFRG RKVPRNSILE RTPFE*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21812
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258412e-56CT025841.2 Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE.
GenBankCT5735032e-56CT573503.1 Medicago truncatula chromosome 5 clone mth2-117h16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613209.11e-148axial regulator YABBY 4
SwissprotQ9LDT31e-71YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A2Z6NUT91e-155A0A2Z6NUT9_TRISU; Uncharacterized protein
STRINGAES961671e-148(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-74YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]