PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21835
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 275aa    MW: 31642.4 Da    PI: 8.9069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21835genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86.2e-1121112199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f k+ +ps  + +  +++p +f++++g++   +   t++ ++g +We++l  +k+++ +++ + W+eFv+   +  g  + Fk+
  Tp57577_TGAC_v2_mRNA21835  21 FMKAILPSPIHVKE-IRIPDEFITRFGNE--LKNVATVTVPDGCVWEMEL--KKCDENVFFCNKWQEFVEYYSIGYGCYLSFKY 99 
                                56666677766666.99******999755..566899999**********..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g+s+f   v +f++
  Tp57577_TGAC_v2_mRNA21835 100 EGNSKF--SVIIFDA 112
                                **9999..8888876 PP
2B3512.6e-161872691599
                                -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 +++p +fa+++ +++    + ++l++++g++Wev +i+ + +s++++++kG  +F ++n+L  gD +vF+l++++   l+v++
  Tp57577_TGAC_v2_mRNA21835 187 YVYVPSDFAQKYlKLN----VPIKLQNSHGEQWEVLCIVhDSRSSSMLISKGFAKFESDNNLSHGDYCVFELIKKKPVVLKVTM 266
                                5789*******96444....56***************887888888***************************99999899999 PP

                                E-S CS
                         B3  97 frk 99 
                                fr+
  Tp57577_TGAC_v2_mRNA21835 267 FRA 269
                                885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1916112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1916113IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-1219111No hitNo description
PROSITE profilePS5086310.2520113IPR003340B3 DNA binding domain
SMARTSM010195.0E-1021113IPR003340B3 DNA binding domain
PfamPF023621.3E-822112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-17170269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16171268IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.983173270IPR003340B3 DNA binding domain
SMARTSM010191.2E-7179270IPR003340B3 DNA binding domain
CDDcd100174.63E-13180268No hitNo description
PfamPF023621.4E-14187269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQPRRGRCVR PWLPEKESKH FMKAILPSPI HVKEIRIPDE FITRFGNELK NVATVTVPDG  60
CVWEMELKKC DENVFFCNKW QEFVEYYSIG YGCYLSFKYE GNSKFSVIIF DATSVEICYP  120
FKTPSSNGEP KTKYPSPRKR SKVETSESPG KKVKSMSTDA STRAEDAAKE FNTNNPYFCS  180
KITIRKYVYV PSDFAQKYLK LNVPIKLQNS HGEQWEVLCI VHDSRSSSML ISKGFAKFES  240
DNNLSHGDYC VFELIKKKPV VLKVTMFRAV DYCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1814727218145B3 domain-containing transcription factor VRN1
4i1k_B2e-1814727218145B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21835
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640216.11e-145B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A2K3PAY30.0A0A2K3PAY3_TRIPR; B3 domain-containing protein
STRINGAES986031e-156(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-27B3 family protein