PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21836
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 249aa    MW: 28664.1 Da    PI: 9.3075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21836genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.9e-128851598
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                               + ++p +f++++g++   +  +t+  ++g +We++l  +k+++++++ +GW+eFv+   +  g  + Fk++g+s+f  +v +f+
  Tp57577_TGAC_v2_mRNA21836  8 MQRIPDEFITRFGNE--LKNVVTIIVPDGCVWEMEL--KKCDEHVFFCNGWQEFVEYYSIGYGCYLSFKYKGNSKF--RVIIFN 85
                               458******999855..66799999***********..**********************************9999..777776 PP
2B337.73.6e-12154243899
                                -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                         B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                s v k +++++p +fa ++ ++    ++ ++l++++g++ ev +i  + +s+ + ++kG ++F + n+L  gD +vF+l++++ 
  Tp57577_TGAC_v2_mRNA21836 154 SKVAKGRCVYVPSDFAFKYlKL----NVPIKLQNSHGEQQEVFCILpDSRSSYMRISKGFSKFQRNNNLSPGDYCVFELIKKKP 233
                                567788889*******999644....456***************996666666889************************9999 PP

                                E..EEEEE-S CS
                         B3  90 felvvkvfrk 99 
                                  l+v++fr+
  Tp57577_TGAC_v2_mRNA21836 234 VVLKVTMFRA 243
                                9899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.21187IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-19286IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-7287IPR003340B3 DNA binding domain
CDDcd100172.46E-12585No hitNo description
Gene3DG3DSA:2.40.330.105.0E-17787IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9885IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-12145243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-14145242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.148147244IPR003340B3 DNA binding domain
SMARTSM010190.0014152244IPR003340B3 DNA binding domain
CDDcd100172.16E-11154242No hitNo description
PfamPF023621.2E-10154243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTCHHLSMQR IPDEFITRFG NELKNVVTII VPDGCVWEME LKKCDEHVFF CNGWQEFVEY  60
YSIGYGCYLS FKYKGNSKFR VIIFNATSVE ICYPLKTPST NGEQNKKYSS PRKRSKVETS  120
ESHGKKVKIM SKDASKRAED AANVFNPNNP YFCSKVAKGR CVYVPSDFAF KYLKLNVPIK  180
LQNSHGEQQE VFCILPDSRS SYMRISKGFS KFQRNNNLSP GDYCVFELIK KKPVVLKVTM  240
FRAVDYCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1712124618145B3 domain-containing transcription factor VRN1
4i1k_B2e-1712124618145B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640216.11e-125B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A2K3L8A61e-178A0A2K3L8A6_TRIPR; B3 domain-containing protein
STRINGAES986031e-124(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-24B3 family protein