PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21837
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 309aa    MW: 35796.2 Da    PI: 9.4776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-10671461499
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                ++ ++p +f++++g++   +   t+  ++g +We++l  +k+++++++ + W+eFv+   +  g  + Fk++g+s+f  +v +f
  Tp57577_TGAC_v2_mRNA21837  67 SMQRIPDEFITRFGNE--LKNVATIAVPDGCVWEMEL--KKCDEHVFFCNRWQEFVEYYSIGYGCYLSFKYEGNSKF--RVIIF 144
                                4449******999755..556889999**********..**********************************9999..88888 PP

                                -S CS
                         B3  98 rk 99 
                                ++
  Tp57577_TGAC_v2_mRNA21837 145 DA 146
                                76 PP
2B334.53.7e-112233031799
                                E--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                ++p +fa ++ +++    + ++l++++g++ ev +i  + +s+ + ++kG ++F + n+L  gD +vF+l++++   l+v++fr
  Tp57577_TGAC_v2_mRNA21837 223 YVPSDFALKYlKLN----VPIKLQNSHGEQQEVFCILpDSRSSYMRISKGFSKFQRNNNLSPGDYCVFELIKKKPVVLKVTMFR 302
                                78999999996444....56***************996666666889************************9999989999988 PP

                                S CS
                         B3  99 k 99 
                                +
  Tp57577_TGAC_v2_mRNA21837 303 A 303
                                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1631147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.84154147IPR003340B3 DNA binding domain
CDDcd100176.35E-1155145No hitNo description
SMARTSM010191.6E-655147IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-1761146IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-867146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12204303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-13205302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.304207304IPR003340B3 DNA binding domain
SMARTSM010198.2E-4213304IPR003340B3 DNA binding domain
PfamPF023622.2E-9222303IPR003340B3 DNA binding domain
CDDcd100171.92E-10223302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRSKVWSLNT FHLFAMKPRR GRCVRPSVPE NEPKHFMKAI LPSPIHVKQI VSFSFSPSYN  60
VTCHHLSMQR IPDEFITRFG NELKNVATIA VPDGCVWEME LKKCDEHVFF CNRWQEFVEY  120
YSIGYGCYLS FKYEGNSKFR VIIFDATSVE ICYPFKTPST NEEPNTKYHN PRKRSKVETS  180
ESCGKKAKSL SKDASTRAED AAKEFNTNNP YFCSKITIRK YAYVPSDFAL KYLKLNVPIK  240
LQNSHGEQQE VFCILPDSRS SYMRISKGFS KFQRNNNLSP GDYCVFELIK KKPVVLKVTM  300
FRAVDYCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1518130618145B3 domain-containing transcription factor VRN1
4i1k_B2e-1518130618145B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640216.11e-133B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A2K3PAY31e-174A0A2K3PAY3_TRIPR; B3 domain-containing protein
STRINGAES986031e-142(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-22B3 family protein