PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21862
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26073.4 Da    PI: 9.7863
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21862genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.67e-231664149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+++fs+  k++ +
  Tp57577_TGAC_v2_mRNA21862 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSF 64
                               5689***************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.81868IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-33867IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-28985IPR002100Transcription factor, MADS-box
CDDcd002651.31E-36977No hitNo description
PRINTSPR004041.1E-191030IPR002100Transcription factor, MADS-box
PfamPF003198.7E-251864IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSSGRKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALVVFSPGEK  60
VFSFGHPDVD TVINRYLLHV PPQNNTTMQF IEAHRSANLR ELNTQLTQIN SALDIEKRRN  120
EELTHMRKNA EAQYWWACPV DGXXXXXXXX XXXXXXXXXX XXXXXXXGVP TPTLPFFAGN  180
GSSANMPIHH QPNPQQSQMF PAQFFQNPML QPHLFGFNNM GGGGYGPPGF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-17993186Myocyte-specific enhancer factor 2A
3kov_B6e-17993186Myocyte-specific enhancer factor 2A
3kov_I6e-17993186Myocyte-specific enhancer factor 2A
3kov_J6e-17993186Myocyte-specific enhancer factor 2A
3p57_A6e-17993186Myocyte-specific enhancer factor 2A
3p57_B6e-17993186Myocyte-specific enhancer factor 2A
3p57_C6e-17993186Myocyte-specific enhancer factor 2A
3p57_D6e-17993186Myocyte-specific enhancer factor 2A
3p57_I6e-17993186Myocyte-specific enhancer factor 2A
3p57_J6e-17993186Myocyte-specific enhancer factor 2A
6byy_A5e-17987280MEF2 CHIMERA
6byy_B5e-17987280MEF2 CHIMERA
6byy_C5e-17987280MEF2 CHIMERA
6byy_D5e-17987280MEF2 CHIMERA
6bz1_A6e-17987280MEF2 CHIMERA
6bz1_B6e-17987280MEF2 CHIMERA
6bz1_C6e-17987280MEF2 CHIMERA
6bz1_D6e-17987280MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21862
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628107.11e-119agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-52AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K3L7S81e-134A0A2K3L7S8_TRIPR; MADS-box transcription factor
STRINGAET025831e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-54AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]