PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21993
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 300aa    MW: 34503.2 Da    PI: 5.9989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21993genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.41e-47171433128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                                pGfrFhPt+eel+++yLk+ v gkkl++ +vi  ++iy+++PwdLp   k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkat
  Tp57577_TGAC_v2_mRNA21993  17 PGFRFHPTEEELLDFYLKNMVVGKKLRF-DVIGFLNIYHHDPWDLPDLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKAT 99 
                                9*************************99.99***************8778899******************************* PP

                        NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                g+d+++++    ++ +gl+ktLvfy+grap+g+ktdWvm+eyrl
  Tp57577_TGAC_v2_mRNA21993 100 GSDRKIVTLsdPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRL 143
                                ******987666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.54315161IPR003441NAC domain
SuperFamilySSF1019417.45E-5715161IPR003441NAC domain
PfamPF023651.3E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASMEDINMS TEEIPLPGFR FHPTEEELLD FYLKNMVVGK KLRFDVIGFL NIYHHDPWDL  60
PDLSKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT  120
LVFYEGRAPR GTKTDWVMNE YRLPDNSPLP KDIVLCKIYR KATSLKVLEQ RAAEEEEMKQ  180
MLGSPASPPS STDTISFSYT QQDQHVSLPM LFQQVIPKKE SEPEINETET DDMVSFSHEK  240
IVKDNKKTCG TSLQLPLGKD NVPELQLPIA ADWTQDTFWA QLNSPWLQNW TAYSNILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-451716117168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21993
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607287.10.0NAC domain-containing protein 22 isoform X1
RefseqXP_024636722.10.0NAC domain-containing protein 22 isoform X2
SwissprotQ10S652e-96NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2K3PQU60.0A0A2K3PQU6_TRIPR; Protein FEZ-like
STRINGAES894840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-116NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]