PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22114
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 955aa    MW: 107455 Da    PI: 8.5975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07413457246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g+WT eEd  l+  v++ G ++W  Ia  + ++R + qc  r+q 
  Tp57577_TGAC_v2_mRNA22114 413 GPWTFEEDRSLLSIVQEKGIRNWFDIAVSLATNRIPFQCLARFQR 457
                                89*************************************999995 PP
2Myb_DNA-binding45.81.4e-14504544345
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+ rw 
  Tp57577_TGAC_v2_mRNA22114 504 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 544
                                5*****************99.*********.9**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.75308404IPR017877Myb-like domain
SMARTSM007171.0E-4312408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-9315331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-9379411IPR009057Homeodomain-like
SuperFamilySSF466891.87E-16388460IPR009057Homeodomain-like
PROSITE profilePS5129412.496407463IPR017930Myb domain
SMARTSM007171.6E-6411461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10412463IPR009057Homeodomain-like
CDDcd001671.12E-4414459No hitNo description
PfamPF139211.1E-6415463No hitNo description
SMARTSM0071716465498IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-13468503IPR009057Homeodomain-like
SuperFamilySSF466892.86E-22476547IPR009057Homeodomain-like
PROSITE profilePS5129422.164497551IPR017930Myb domain
SMARTSM007176.8E-12501549IPR001005SANT/Myb domain
PfamPF002491.3E-12504544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-16504547IPR009057Homeodomain-like
CDDcd001671.24E-11505544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MKPRTDEYEQ DNDDDNDDDG LKEDMAALAR ACMFNDDETQ SQEDPLLASG DAIVPFTVTA  60
DSDSDEQSDL ECLKRVQSLY QPNNGTLLPP QPTTATSDDD EDDFETVRAI FKRFSAYDGG  120
GREAWDEENQ ASSLIGEGYV AKTSISDNSD TDELCPDSVL PDNDSKLRIQ PCGFDESCEN  180
DVHLSSQLPK KRSSFPPSAQ AFVDALKKNR VLQKFLRNKL IDIEAKIEEN KRLRDKVKVL  240
KDFQVSCSKR TASALSLKKD PCVQLISSKK SVATNKSKSH NKKVSAMCYG PDENSHVANY  300
KMVLERFPHS LDRKKWSNKE RENLSKGIKQ QFQETVLQIS VDRMSSGCSP GDGNDMDSII  360
ESVKGIEITP ARIREFLTKV NWDRLASMYV AGRTGVECES RWLNCEDPLI NHGPWTFEED  420
RSLLSIVQEK GIRNWFDIAV SLATNRIPFQ CLARFQRSLN SSMINIMLFG RKWNQIAKYV  480
PGRIQSQCRD RYVNSLDPSL KWGGWTEEED LRLEAAITKY GYCWSKVAED VPPRTDSQCR  540
KRWKVICPEQ VPLLQEARKR RRSLLASNFV DRESERPALT LNDFIPLQMV VSTSDVGAEN  600
LQRKRKRQTR GVPKKVKSKK HTKRTQLCTE EVQDAGLREE RPKRHAKKRS FYPEVVQNIV  660
PKKEKPKRHS KKARICPDED SITLACFLHN ISKKKLSKCT KNAISCCDKV KPCINSSETQ  720
DGDSITLACF LHNKSKKKLS KCTKNASQAS SSSKTKTVSK QVENQISCGE QHRLSLSCDI  780
DGTKDLLMQA EVDSSRQVRK LESANAARKP DMPLKFYVRK KKKLSQANLG SGACSPSKLK  840
KGSTLLHGNK SIIISDGSEP SMSKIVEDET VLHGGVAEAE PTTINVAEEY AVLHGGVPEG  900
EPTIVNVVEK ETVLHGGVAD AKPTNIYLEE NDDLLISFLQ NKTKKQRRRI NIRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-204155439151MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-204155439151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539561RKRWKVICPEQVPLLQEARKRRR
2557561RKRRR
3557562RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512739.10.0uncharacterized protein LOC101490682 isoform X1
TrEMBLA0A1S2Z0930.0A0A1S2Z093_CICAR; uncharacterized protein LOC101490682 isoform X1
STRINGXP_004512739.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-137myb domain protein 4r1