PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA22136

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 375aa MW: 42564.8 Da PI: 8.1194

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA22136	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.1	2e-41	2	108	21	128
NAM 21 kkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 +k+++k+l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t++g+Wkatg+d+++++++g+ +glkk Tp57577_TGAC_v2_mRNA22136 2 RKIQQKSLPI-ELIKQVDIYKHDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYTSDGKCIGLKK 84 7999999999.89*************8888999********************************************* PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 +Lvfykgra kg+ktdW+mhe+rl Tp57577_TGAC_v2_mRNA22136 85 SLVFYKGRAAKGTKTDWMMHEFRL 108 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.353	1	144	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-44	2	144	IPR003441	NAC domain
Pfam	PF02365	4.8E-14	24	108	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MRKIQQKSLP IELIKQVDIY KHDPWDLPKL ASSGEKEWYF YCPRDRKYRN SSRPNRVTRA 60 GFWKATGTDR PIYTSDGKCI GLKKSLVFYK GRAAKGTKTD WMMHEFRLPS ISDSNSPPKK 120 FSDKSFSPNV SILDSWAICR IFKKTNSLSM VQKALSHPWI SQLPGSMVSE LLSQTTNINQ 180 FCSENNISCT TEQALSSGTN MQINKNELQQ VSNTNNFSAS DFPTYKPINN INTISKSSQI 240 PCSNGDIVDN LMFYTLEANG STKCPIDDSS ILSNTNYIGF EDTNNQYSGF SISLPQDMQP 300 NIGLENEQLE DQGWRKNIQD QMQLNQWENN LGRTIDFPFS LSPNFDALRN SFIWDSPPCT 360 SEMSTTYVTS KCYT*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MRKIQQKSLP IELIKQVDIY KHDPWDLPKL ASSGEKEWYF YCPRDRKYRN SSRPNRVTRA  60
GFWKATGTDR PIYTSDGKCI GLKKSLVFYK GRAAKGTKTD WMMHEFRLPS ISDSNSPPKK  120
FSDKSFSPNV SILDSWAICR IFKKTNSLSM VQKALSHPWI SQLPGSMVSE LLSQTTNINQ  180
FCSENNISCT TEQALSSGTN MQINKNELQQ VSNTNNFSAS DFPTYKPINN INTISKSSQI  240
PCSNGDIVDN LMFYTLEANG STKCPIDDSS ILSNTNYIGF EDTNNQYSGF SISLPQDMQP  300
NIGLENEQLE DQGWRKNIQD QMQLNQWENN LGRTIDFPFS LSPNFDALRN SFIWDSPPCT  360
SEMSTTYVTS KCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-45	2	147	37	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-45	2	147	37	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-45	2	147	37	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-45	2	147	37	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	2	147	40	171	NAC domain-containing protein 19
3swm_B	1e-44	2	147	40	171	NAC domain-containing protein 19
3swm_C	1e-44	2	147	40	171	NAC domain-containing protein 19
3swm_D	1e-44	2	147	40	171	NAC domain-containing protein 19
3swp_A	1e-44	2	147	40	171	NAC domain-containing protein 19
3swp_B	1e-44	2	147	40	171	NAC domain-containing protein 19
3swp_C	1e-44	2	147	40	171	NAC domain-containing protein 19
3swp_D	1e-44	2	147	40	171	NAC domain-containing protein 19
4dul_A	9e-45	2	147	37	168	NAC domain-containing protein 19
4dul_B	9e-45	2	147	37	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA22136

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ455195	1e-124	DQ455195.1 Medicago truncatula cDNA-AFLP fragment BC41M32_125 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450964.1	0.0	protein FEZ isoform X2
Swissprot	Q9ZVH0	4e-80	FEZ_ARATH; Protein FEZ
TrEMBL	A0A072U5H5	0.0	A0A072U5H5_MEDTR; NAC domain class transcription factor
STRING	XP_004489492.1	1e-163	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-77	NAC family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA22136

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]