PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2215
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 244aa    MW: 27673.2 Da    PI: 9.7156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2215genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.93.1e-26159225159
                               ---SS-EEEEEEE--TT-SS-........EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefp........rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vk++++p        rsYYrCt+++C+vkk+ver aedp++v++tYeg+H h+
  Tp57577_TGAC_v2_mRNA2215 159 LDDGYKWRKYGQKVVKNTQHPrynitiiqRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHAHT 225
                               59******************94444444459***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-30143225IPR003657WRKY domain
PROSITE profilePS5081125.109154227IPR003657WRKY domain
SuperFamilySSF1182903.14E-24154225IPR003657WRKY domain
SMARTSM007747.8E-34159226IPR003657WRKY domain
PfamPF031067.8E-20160224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSQIINNNLF EEQNQIPTQM GFIPFPTNLI TFPSLGCNNQ SLKALSSIAS SLTSESADST  60
SNLTQTLLSS ANLQKPSREY LTPSFGGTQF LSLHRSSVNP WAILGGVSDC LNDSSKRSGV  120
DHDHKLGVSS MKMKKMKGRK KVREPRFCFK TLSTDLDVLD DGYKWRKYGQ KVVKNTQHPR  180
YNITIIQRSY YRCTQENCRV KKRVERLAED PRMVITTYEG RHAHTPSNDD LHDSQTHSHD  240
FLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-221532241174Probable WRKY transcription factor 4
2lex_A3e-221532241174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2215
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630131.21e-117probable WRKY transcription factor 13
TrEMBLA0A2K3NWH31e-146A0A2K3NWH3_TRIPR; WRKY transcription factor
STRINGGLYMA08G15210.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-43WRKY DNA-binding protein 13