PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2216
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 305aa    MW: 34558.9 Da    PI: 6.789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2216genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19117167256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  Tp57577_TGAC_v2_mRNA2216 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAAFAYDNAAYKLRGE 167
                               59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-33116175No hitNo description
Gene3DG3DSA:3.30.730.105.2E-32117175IPR001471AP2/ERF domain
PROSITE profilePS5103222.998117174IPR001471AP2/ERF domain
SMARTSM003803.2E-37117180IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23117175IPR016177DNA-binding domain
PfamPF008471.1E-12118167IPR001471AP2/ERF domain
PRINTSPR003676.5E-11118129IPR001471AP2/ERF domain
PRINTSPR003676.5E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSTAINIHNS NKNITHGFLD PYNEELMKAL EPFIKSDSSL ISSSTHQQSH FPSTSYSPFS  60
PNYFTYETQT SSIGLNQLTP SQILQIQTQI QIPQKSHLSQ KPVSMKHFST PSKPMKLYRG  120
VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAAFAYDNA AYKLRGEFAR LNFPHMSHHE  180
NYNPLPSSVD SKLQAICETL AISQKQGKQG NNEKPCSSVV EDVKPVVCIP TKPKDELVCH  240
KFEDFKVDNE KTMISSMSDE CSTCLSSPES GVTFLDFSDS SHWDEVENFG LKKYPSVEID  300
WEAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22116174160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-22116174463ATERF1
3gcc_A2e-22116174463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439640.0GU443964.1 Trifolium repens clone BAC 88n22 myo-inositol-1-phosphate synthase, bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown genes.
GenBankGU4439660.0GU443966.1 Trifolium repens clone BAC 113f04 bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504059.11e-149ethylene-responsive transcription factor ERF060
SwissprotO656651e-80ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLD3YBE70.0D3YBE7_TRIRP; Dehydration responsive element binding protein
STRINGXP_004504059.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-59ERF family protein