PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22194
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 170aa    MW: 18978.3 Da    PI: 9.4086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22194genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000263557123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C+k Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA22194 35 YECKTCNKKFSSFQALGGHRASH 57
                               99**********99999998887 PP
2zf-C2H213.90.0001684106123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg+ Fs    L  H+r+H
  Tp57577_TGAC_v2_mRNA22194  84 HECSICGMGFSLGQALGGHMRKH 106
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0613557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3673562IPR007087Zinc finger, C2H2
PfamPF139122.7E-113559IPR007087Zinc finger, C2H2
SuperFamilySSF576671.0E-935106No hitNo description
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-482106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.09484106IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-884107IPR007087Zinc finger, C2H2
PROSITE profilePS501579.45284106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAMKRQRSNE ESIDLVNCLM LLSCPQQKTI ENGEYECKTC NKKFSSFQAL GGHRASHKRV  60
KLSEGEELKE QAKSLSLWNK PKMHECSICG MGFSLGQALG GHMRKHRTLI NEGVSSMNEI  120
IAKIPILKRS NSKRVMGLDL NLTPLENDDL MMFGMKSPIP LTPIPLSLF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253681e-157AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence.
GenBankAC1357971e-157AC135797.13 Medicago truncatula clone mth2-11f7, complete sequence.
GenBankBT1473171e-157BT147317.1 Medicago truncatula clone JCVI-FLMt-2I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625524.11e-102zinc finger protein ZAT11
SwissprotQ9SLD43e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLG7L0M71e-101G7L0M7_MEDTR; Cys2-His2 zinc finger transcription factor
STRINGAES817421e-102(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-43C2H2 family protein