PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22196
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 199aa    MW: 22456.2 Da    PI: 9.2758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22196genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000337193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C+k Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA22196 71 YECKTCNKKFSSFQALGGHRASH 93
                               99**********99999998887 PP
2zf-C2H214.30.00012118140123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg+ Fs    L  H+r+H
  Tp57577_TGAC_v2_mRNA22196 118 HECSICGQEFSLGQALGGHMRRH 140
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.7627198IPR007087Zinc finger, C2H2
SMARTSM003550.0617193IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.5E-971140No hitNo description
PfamPF139126.2E-117195IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4116140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.847118140IPR007087Zinc finger, C2H2
SMARTSM003550.079118140IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-9118142IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
LYHPYHILIH KLLITNFTSN FANSTLVDMK RQRDIEGLES IDLANCLMML SYPQQQQNNK  60
PNQKSFGPME YECKTCNKKF SSFQALGGHR ASHKRSKFEG DELIKANALT LGNKPKMHEC  120
SICGQEFSLG QALGGHMRRH KAIINEEVVS SMEKVVKLPI LKRLNSARIM CLDLNLTPLE  180
NDLKLLFGKM APNLDVLV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253681e-167AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627195.11e-104zinc finger protein ZAT11-like
SwissprotQ9SLD48e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A396H5121e-102A0A396H512_MEDTR; Putative transcription factor C2H2 family
STRINGAES817401e-103(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-44C2H2 family protein