PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA22210

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 143aa MW: 16480.6 Da PI: 9.8891

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA22210	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.6	8.1e-08	23	76	47	90
FAR1 47 k.........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 k + ++ ++r+e+r+gCka + +k+++ +++++++ e H H+l Tp57577_TGAC_v2_mRNA22210 23 KprsdspiviEFEKVKERPEERIGCKAGIYLKLDEtLNVYKIYRWEGTHCHQLH 76 0444456666678899****************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-4	33	76	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MVSMHNPNKE GFKKGSLLNP NNKPRSDSPI VIEFEKVKER PEERIGCKAG IYLKLDETLN 60 VYKIYRWEGT HCHQLHRKEH HRYLRSFREV NEVQGQLALI NSKAGMSMRT SYEVMGQGVG 120 GXXXXXXXXX XXXXXXXXXX XX*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA22210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	9e-66	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024632961.1	4e-63	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	G7I8T1	9e-66	G7I8T1_MEDTR; FAR1 DNA-binding domain protein
TrEMBL	Q2HW38	2e-65	Q2HW38_MEDTR; Uncharacterized protein
STRING	AES61431	3e-66	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA22210