PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22216
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 302aa    MW: 33989.9 Da    PI: 6.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22216genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12243748
                               HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               eEd  l+++++ +G+g+W+  ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA22216  2 EEDNMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 43
                               9***************************************97 PP
2Myb_DNA-binding53.94.2e-174993147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA22216 49 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 93
                               89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.309143IPR017930Myb domain
SMARTSM007175.9E-5145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-20250IPR009057Homeodomain-like
SuperFamilySSF466894.3E-26290IPR009057Homeodomain-like
CDDcd001672.51E-9243No hitNo description
PfamPF002493.7E-11243IPR001005SANT/Myb domain
PROSITE profilePS5129425.1374498IPR017930Myb domain
SMARTSM007174.8E-164896IPR001005SANT/Myb domain
PfamPF002491.7E-154993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-265198IPR009057Homeodomain-like
CDDcd001674.93E-125194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
NEEDNMLINY INTHGPGNWR NLPKNAGLQR CGKSCRLRWT NYLRPDIKRG RFSFEEEETI  60
IQLHSVLGNK WSAIAARLPG RTDNEIKNYW NTHIRKRLLR NGIDPVTHTP RLDHLFDISS  120
VNILRSALLG GTNPSFLNLL GGAQALMNPE LLKLAATATL LNNNNMNLVS QNPQQINNVN  180
NGNFTQQVQS QVYPQDQFQI PTQINNANNG LLGNMSCSSS AENSNPCYFG EDLISKQYSE  240
LFHCLNDVNK NNTGYESVIS STPLSTTPTP TPLNSPSTYV NSNTEEERDT YCSDIFKFEI  300
PE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2419832128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22216
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597096.21e-171transcription factor MYB41
SwissprotQ9LDR81e-77MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2K3PMA40.0A0A2K3PMA4_TRIPR; Transcription factor MYB 39-like protein
STRINGXP_004487343.11e-168(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-73MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]