PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22313
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 288aa    MW: 32973.6 Da    PI: 9.2521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22313genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1501.1e-46711991128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrF+Ptd+elv +yLk k+ + +l++ ++i+e++++k++Pw+Lp   +++e+++yfFs ++ ky++g+r nr+t+sgyWk
  Tp57577_TGAC_v2_mRNA22313  71 LPPGFRFQPTDQELVFQYLKCKTFSYQLPA-SIIPEINVCKYDPWELPG--NHGEQDMYFFSAKEAKYRNGNRMNRSTNSGYWK 151
                                79****************************.89***************4..457899*************************** PP

                        NAM  85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+v ++    +g   g++k+Lvfy+ ++p+g++t+W+mheyrl
  Tp57577_TGAC_v2_mRNA22313 152 ATGSDKKVSVSssisNGGIAGIRKSLVFYNRKSPNGSRTHWIMHEYRL 199
                                ********99877777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5367227IPR003441NAC domain
PROSITE profilePS5100552.45571227IPR003441NAC domain
PfamPF023652.1E-2472199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MFLIHIDILS VLLSHSHQSI YKYTHASTYV FGVAMLIHKP HINHFFEFKE KVLFKEMEKM  60
KFVKNGVSNK LPPGFRFQPT DQELVFQYLK CKTFSYQLPA SIIPEINVCK YDPWELPGNH  120
GEQDMYFFSA KEAKYRNGNR MNRSTNSGYW KATGSDKKVS VSSSISNGGI AGIRKSLVFY  180
NRKSPNGSRT HWIMHEYRLV SVETTACNQS FYEIDIGDWV LCRIFMKKRS NRMTLNTNVD  240
EAQPKFFDFM MAHKSSAPDP TTHFSSSSSC SSSGEVCSSG ERCSYID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-477123017168NO APICAL MERISTEM PROTEIN
1ut4_B1e-477123017168NO APICAL MERISTEM PROTEIN
1ut7_A1e-477123017168NO APICAL MERISTEM PROTEIN
1ut7_B1e-477123017168NO APICAL MERISTEM PROTEIN
3swm_A1e-477123020171NAC domain-containing protein 19
3swm_B1e-477123020171NAC domain-containing protein 19
3swm_C1e-477123020171NAC domain-containing protein 19
3swm_D1e-477123020171NAC domain-containing protein 19
3swp_A1e-477123020171NAC domain-containing protein 19
3swp_B1e-477123020171NAC domain-containing protein 19
3swp_C1e-477123020171NAC domain-containing protein 19
3swp_D1e-477123020171NAC domain-containing protein 19
4dul_A1e-477123017168NAC domain-containing protein 19
4dul_B1e-477123017168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22313
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602768.11e-104NAC domain-containing protein 83
SwissprotQ9FY939e-65NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2K3KXX81e-172A0A2K3KXX8_TRIPR; NAC domain-containing protein
STRINGAES730191e-104(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-60NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]