PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22388
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 104aa    MW: 12330.3 Da    PI: 10.3391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22388genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-172269148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W+ eEd++l+ +++++G ++W+  ++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA22388 22 KGAWSMEEDQRLIAYIERHGHPNWRQLPKVAGLARCGKSCRLRWMNYL 69
                               79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9331773IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-231772IPR009057Homeodomain-like
SMARTSM007171.9E-112171IPR001005SANT/Myb domain
PfamPF002491.7E-152269IPR001005SANT/Myb domain
SuperFamilySSF466899.71E-232397IPR009057Homeodomain-like
CDDcd001671.71E-92469No hitNo description
PROSITE profilePS500904.79770103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-97398IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
HFNFVPKKMV RAPYFDENGT KKGAWSMEED QRLIAYIERH GHPNWRQLPK VAGLARCGKS  60
CRLRWMNYLR PNLKRGNYTQ KEEQMIMELN KKHGNKYDFV ISC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-14229727101MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22388
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443533.16e-57transcription factor MYB8
SwissprotP200243e-37MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A072TL121e-55A0A072TL12_MEDTR; Myb transcription factor
STRINGXP_004507244.13e-52(Cicer arietinum)
STRINGGLYMA06G45520.12e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-38myb domain protein 9
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]