PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22405
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 146aa    MW: 16919.8 Da    PI: 4.5784
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22405genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-0916402348
                               -HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                               +W++Ia+ ++ gR+++++k++w+++l
  Tp57577_TGAC_v2_mRNA22405 16 RWSLIAESLP-GRSDNEIKNYWHSHL 40
                               6*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.382144IPR017930Myb domain
CDDcd001677.78E-6940No hitNo description
Gene3DG3DSA:1.10.10.604.4E-121541IPR009057Homeodomain-like
SuperFamilySSF466891.87E-81548IPR009057Homeodomain-like
PfamPF002494.3E-71540IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
LLIFTTLCDK LLICDRWSLI AESLPGRSDN EIKNYWHSHL KKISRHNETN LIKEIQKTKT  60
TSEDVSDDSH HILESSTSMS SSHVELNMNL YRKEDSVASW EIWDGFSNNF WTEPFISENA  120
LCQDYSPVSW YGSEAEDPFF TWIPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22405
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443533.11e-51transcription factor MYB8
TrEMBLA0A072TL123e-50A0A072TL12_MEDTR; Myb transcription factor
STRINGXP_004507244.16e-46(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.16e-11myb domain protein 13