PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22526
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 167aa    MW: 19096.1 Da    PI: 8.4103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22526genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-052446123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C  Cg++F++ + L+ H ++H
  Tp57577_TGAC_v2_mRNA22526 24 HVCFECGRTFKTLHGLHIHESSH 46
                               79*****************9998 PP
2zf-C2H218.36.3e-0689112123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ++C++C+  Fs+ ++L +H  + H
  Tp57577_TGAC_v2_mRNA22526  89 FQCNYCTSKFSTAEELDNHVANrH 112
                                89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.982446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3052451IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-52471No hitNo description
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SMARTSM003551.34971IPR015880Zinc finger, C2H2-like
PfamPF139120.00155072IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003550.009289112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.07889117IPR007087Zinc finger, C2H2
PROSITE patternPS00028091112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSKSKIYEEE RSQKIHYLMK DMFHVCFECG RTFKTLHGLH IHESSHSKAR CDQCGEIFSS  60
PQACGRHRST HRIIEYHPPP HPPIPQIPFQ CNYCTSKFST AEELDNHVAN RHRFEDLWKK  120
VLLPSESGGS PNPYISSNIV NYIIIIIIII IIIIIKGNSC IILLKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A392NZP83e-56A0A392NZP8_9FABA; Zinc finger and SCAN domain-containing protein 2-like