PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22606
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 256aa    MW: 28160.8 Da    PI: 10.8824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22606genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10555146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Tp57577_TGAC_v2_mRNA22606  5 KQKWTAEEEAALKAGVVKYGAGKWRTILTDPDfstilRMRSNVDLKDKWRN 55
                               79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.823161IPR017930Myb domain
SuperFamilySSF466894.68E-15267IPR009057Homeodomain-like
SMARTSM007176.6E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12556IPR009057Homeodomain-like
PfamPF002497.6E-7555IPR001005SANT/Myb domain
CDDcd116607.93E-19657No hitNo description
SuperFamilySSF467852.23E-15115195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.5E-12115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.443117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.7E-14119189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.6E-9122177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKYGAGKWRT ILTDPDFSTI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLPPPK TENNNHTTST AIVQYNPEVA APKPLAVSGG ISTSKEQISR  120
LDNLILESIV KLKEPKGSDM AAIAAYIEDQ YRSPPNLMKL LSTKLKHMVA GGKLVKANHK  180
YRIATNSTKT SEKRKSSSFC GILFKRIHPL ALPTSSPFIP RTTTGESTCN SILLKLCRRA  240
KHSPSFTPTA PPHKH*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684770.0EF468477.1 Medicago truncatula MYB transcription factor MYB25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453466.11e-130telomere repeat-binding factor 2 isoform X2
SwissprotQ8VWK41e-63TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2Z6NA731e-139A0A2Z6NA73_TRISU; Uncharacterized protein
STRINGAES945201e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-57telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]