PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22747
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 342aa    MW: 38347.2 Da    PI: 6.9348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22747genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-182471148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd +lvd ++++G g+W++ ++  g++R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA22747 24 KGPWTPEEDRILVDHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 71
                               79********************************************97 PP
2Myb_DNA-binding53.74.7e-1777122148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++T+e+++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA22747  77 RGKFTEEDEKTIINLHAVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 122
                                89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-261574IPR009057Homeodomain-like
PROSITE profilePS5129418.3741971IPR017930Myb domain
SuperFamilySSF466899.17E-3221118IPR009057Homeodomain-like
SMARTSM007171.2E-152373IPR001005SANT/Myb domain
PfamPF002497.3E-172471IPR001005SANT/Myb domain
CDDcd001671.70E-122671No hitNo description
PROSITE profilePS5129425.79872126IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2775126IPR009057Homeodomain-like
SMARTSM007177.5E-1676124IPR001005SANT/Myb domain
PfamPF002498.7E-1677122IPR001005SANT/Myb domain
CDDcd001678.24E-1279122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
NSFSNSQHSN MGRAPCCDES GLKKGPWTPE EDRILVDHIE KHGHGSWRAL PKLAGLNRCG  60
KSCRLRWTNY LRPDIKRGKF TEEDEKTIIN LHAVLGNKWS AIAGHLPGRT DNEIKNFWNT  120
HLKKKLLQMG LDPVTHRPRI DHLNLMTNLQ HFLTANVLHN FSNTLDITTT NALKLQSDAA  180
KFQLLQNMLQ IQVLNANNIT PPINPFGQEN FLNEVLGLNN NQSNFLSQNY HGNFQGFEVP  240
QVKNDVINGY QCMNNGGSSN SSSCLNQKVD EVFDATNSSL NLLPNLVSVS PECSAVKGMM  300
ENKVNQNECS NPSSTSTTFE MLGDFMYEDV SIYACWKDLL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29221265108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22747
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456644.10.0transcription factor MYB53
SwissprotQ9SBF38e-86MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2K3MRN20.0A0A2K3MRN2_TRIPR; Transcription factor MYB 39-like protein
STRINGXP_004505589.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-94myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]