PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA22840

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 301aa MW: 33609 Da PI: 5.7884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA22840	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ +F+++ L H++ H Tp57577_TGAC_v2_mRNA22840 85 FRCRFCHITFTTSQALGGHQNAH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.15E-5	79	124	No hit	No description
PROSITE profile	PS50157	10.596	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSERIFLGND EDRNLPNKME EEPKLILEKE LGAVPPTTES NSGDLPTSKS LEIGEHSSSS 60 QNVTGEPSSQ NATSEPLPQR EVGEFRCRFC HITFTTSQAL GGHQNAHKQE RSLEKMEEQR 120 RENEINAILR FRSNNRPYHY SFSNPIRFQG NSYMHNANFH HPISPPMNNT WAIGSPSGGY 180 RGLYMPNTPD TSPRFVMQMS NSSLTTQQFG MTNFWGANQN VELPIHLRSN TLGLGLLPQE 240 NQAPSNAEGD ERNFNSHNEI QTLQLLPRGP IREGTIQPNS NVSSSSTQST SEEVNLNLTL 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA22840

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626741.1	4e-83	zinc finger protein 1-like
TrEMBL	A0A2K3LEK9	0.0	A0A2K3LEK9_TRIPR; Zinc finger protein 3-like
STRING	AES79570	2e-82	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16711	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA22840