PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2288

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 206aa MW: 23860 Da PI: 7.4598

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2288	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.5	5.4e-28	129	187	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K vk++ + r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe Tp57577_TGAC_v2_mRNA2288 129 MDDGYKWRKYGKKIVKNNLNLRNYYKCSSVGCKVKKRVERDRDDSSYVITTYEGVHNHE 187 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-31	116	189	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-27	121	189	IPR003657	WRKY domain
PROSITE profile	PS50811	29.298	124	189	IPR003657	WRKY domain
SMART	SM00774	2.7E-32	129	188	IPR003657	WRKY domain
Pfam	PF03106	1.8E-22	130	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MLFCLGVNSD FIYLILTYLQ GTMMSTLNLK IFFFLLFCLD CHHFMQQLSD YLMFDDIHHD 60 QESRTQSIES LEKVTSQSTN ESLEKITFSD ASQGFNDATS KSNNIQKKGI TREVGPKIAF 120 RTKSEIEIMD DGYKWRKYGK KIVKNNLNLR NYYKCSSVGC KVKKRVERDR DDSSYVITTY 180 EGVHNHESPF TSYCNQISFV QYSDA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-25	119	189	7	77	Probable WRKY transcription factor 4
2lex_A	6e-25	119	189	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2288

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003630118.1	4e-74	probable WRKY transcription factor 51
Swissprot	Q93WU9	4e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	G7LBB4	8e-73	G7LBB4_MEDTR; Putative transcription factor WRKY family
STRING	AET04594	1e-73	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-44	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2288

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]