PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22960
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 385aa    MW: 43554.1 Da    PI: 7.9667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22960genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-20239289256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 ykGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Tp57577_TGAC_v2_mRNA22960 239 LYKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 289
                                59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-31238298No hitNo description
Gene3DG3DSA:3.30.730.102.0E-31239297IPR001471AP2/ERF domain
SMARTSM003806.2E-34239302IPR001471AP2/ERF domain
PROSITE profilePS5103222.379239296IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22239297IPR016177DNA-binding domain
PfamPF008473.7E-12240289IPR001471AP2/ERF domain
PRINTSPR003671.7E-10240251IPR001471AP2/ERF domain
PRINTSPR003671.7E-10262278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEDTFPKMEI FTQKELPTCL QEIVTTESKY LEDTIIRRDS YSLTSSSTLS PQNRFWCTSN  60
STSMKQEVVP LTTLVNQMPS NFNDHYDDMK RMKGINQSIS GFNYMSSPNV IASDIKHSFV  120
PLNLLETLPA LTLTPVSDEP TGSLASSSTT PKYPNLTLFL QEPSMLYKSS EIISTTSYPT  180
YPMSQFGLTQ HQQNSGYGFY DSNKMNKNMM ENLQSKSFNE NWLSTTKTQP MKYGARGKLY  240
KGVRQRHWGK WVAEIRLPRN RTRVWLGTFD TAEDAAIAYD TAAYILRGEC AQLNFPDLKH  300
VIQANSLNGT TASLVEAKLQ AISQQGVSSS HRKQRSNNKH IDEVKNGKEE TMKDLKVGGD  360
TDDRSKSMQN EICDVETVQL SRMPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22235296163ATERF1
3gcc_A1e-22235296163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667070.0AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591645.20.0ethylene-responsive transcription factor ERF062
TrEMBLG7I2Z10.0G7I2Z1_MEDTR; AP2 domain class transcription factor
STRINGAES618960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-47ERF family protein