PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2304
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 358aa    MW: 41056.4 Da    PI: 5.6849
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2304genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-1073101533
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                               k +rr+++NReAAr+sR++Kka i++Le 
  Tp57577_TGAC_v2_mRNA2304  73 KMQRRLAQNREAARKSRLKKKAHIQQLES 101
                               889************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-969151IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6871113IPR004827Basic-leucine zipper domain
PfamPF001708.5E-773101IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-673106No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-773117No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
PfamPF141442.2E-26160234IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDSSSSQYVS TRNIGVYDPT HQFTIWEDHF KSNGDLSLYE PNMKFNNQSE DASFGILGTS  60
IKYDQQANKL TEKMQRRLAQ NREAARKSRL KKKAHIQQLE SCRLKLVQVE QELDNTRQQG  120
LYIGGGLDSN NLGFAGSANS EITTFKMEYE HWVEEQNRQI LELNSALSSH ISDTQIEELV  180
NGIMNHYFKL FCMKSDAAKI DVFYVITGMW KTTSEQFFLW IGGFRPSELL KVLVPLIEPL  240
TEEQRFDAYN LEKSCRQAED ALSQGMEKLQ GMLTDTVAAG ELIEGTYTPH MDTAIERLEA  300
LASFVNQADH LRQETLQQMS RILTIRQTAR WLLVLGEYFQ RLRDLSKVWA NRGREPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407500.0BT140750.1 Medicago truncatula clone JCVI-FLMt-5N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630093.10.0transcription factor TGA1 isoform X2
SwissprotQ391621e-160TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A2K3NWJ90.0A0A2K3NWJ9_TRIPR; Transcription factor TGA1
STRINGAET045690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-162TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]