PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23072
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 177aa    MW: 20319.5 Da    PI: 9.8248
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-2021107190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +f+ +Y+ke GF vrk++++k+ ++g i + +fvC keg+r+++ ++    ++++aetrt+C  ++ ++++ d+k++++++++ 
  Tp57577_TGAC_v2_mRNA23072  21 EFWAAYGKEKGFGVRKQYTNKR-KDGYIRSFRFVCCKEGHRTKNPTS-LLVKNPKAETRTDCPTRIALSRK-DEKFVIHEFVEA 101
                                69***************99887.8899*****************999.9999******************9.9*********** PP

                       FAR1  85 HnHela 90 
                                HnH l+
  Tp57577_TGAC_v2_mRNA23072 102 HNHLLQ 107
                                ***885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1621106IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTIVTTPSVG MKFDSVNEAW EFWAAYGKEK GFGVRKQYTN KRKDGYIRSF RFVCCKEGHR  60
TKNPTSLLVK NPKAETRTDC PTRIALSRKD EKFVIHEFVE AHNHLLQLPE TTHMLASHRK  120
ISEVQAYEIE MAEDSRLMQK ASFQLMSAHV GGRDNLGYTR LDAKNXXXXX XXXXXX*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632639.11e-67protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6N1363e-94A0A2Z6N136_TRISU; Uncharacterized protein
STRINGXP_004506622.13e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-17FAR1-related sequence 5