PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23077
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-X1
Protein Properties Length: 1168aa    MW: 127219 Da    PI: 8.0493
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23077genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.79.2e-07360378119
                   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                CG+H+C+  CH GpC+pC+
  Tp57577_TGAC_v2_mRNA23077 360 CGRHRCENACHVGPCDPCQ 378
                                ******************6 PP
2zf-NF-X121.45.4e-07482500119
                   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                CG+H C++ CH G+CppC+
  Tp57577_TGAC_v2_mRNA23077 482 CGIHACKESCHVGECPPCK 500
                                ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.38E-6183253No hitNo description
PROSITE profilePS500168.6190251IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590193248IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.362193249IPR001841Zinc finger, RING-type
CDDcd060083.43E-5282343No hitNo description
SMARTSM004380.05305323IPR000967Zinc finger, NF-X1-type
PfamPF014223.9307322IPR000967Zinc finger, NF-X1-type
CDDcd060082.41E-11350398No hitNo description
SMARTSM004384.6E-4360379IPR000967Zinc finger, NF-X1-type
PfamPF014222.3E-5360377IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-7414459No hitNo description
SMARTSM004380.22424443IPR000967Zinc finger, NF-X1-type
PfamPF014220.024424441IPR000967Zinc finger, NF-X1-type
CDDcd060084.91E-14472520No hitNo description
SMARTSM004388.9E-5482501IPR000967Zinc finger, NF-X1-type
PfamPF014227.1E-5482500IPR000967Zinc finger, NF-X1-type
SMARTSM00438110540571IPR000967Zinc finger, NF-X1-type
PfamPF014220.95540551IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-8569621No hitNo description
SMARTSM004380.001579598IPR000967Zinc finger, NF-X1-type
PfamPF014229.7E-4579596IPR000967Zinc finger, NF-X1-type
CDDcd060082.25E-5626674No hitNo description
SMARTSM004381.3636654IPR000967Zinc finger, NF-X1-type
PfamPF0142211641653IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2689719IPR000967Zinc finger, NF-X1-type
PfamPF014220.3689704IPR000967Zinc finger, NF-X1-type
SMARTSM004380.91728749IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3307.7E-69611016IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1168 aa     Download sequence    Send to blast
MSLQTRRDRR EGGSRFPPQR APRQEWVPKG TGASTTTAPT TSTTAPTTTA TATTAVVDPT  60
SLHSHQKNTN GDGGSSNQGS VVSPPLARHR SNHHVTHRVE REHVAHRVER EHVAHSVDRE  120
HVAHQVEREN VAHRVERENI AHRVERQHVA HRVERDKGRS GNTAGREYGS RDSSLPQLVQ  180
EIQEKLTRGT VECMICYDMV RRSAPIWSCS SCYSIFHLNC IKKWARAPTS VDLSAEKNLG  240
FNWRCPGCQF VQHTSSRDIK YVCFCGKRTD PPHDLYLTPH SCGEPCGKPL EKEVLSTEGR  300
KDQLCPHACV LQCHPGPCPP CKAFAPPRLC PCGKKRIATR CSDRQSDLTC GQRCDKLLNC  360
GRHRCENACH VGPCDPCQVL INASCFCSKM TQVIFCGEMA MKGEFKVEDG VFSCGSNCGT  420
ELSCGNHICR DVCHPGGCGE CEFLPSRVKT CCCGKTKLED ERKSCVDPIP TCSQVCGKLL  480
PCGIHACKES CHVGECPPCK VLISQKCRCG STSRTVECYK TITENQKFTC EKPCGAKKNC  540
GRHRCSEKCC PLSGPNKDLT IADWDPHFCS MLCGKKLRCG QHVCETLCHS GHCPPCLETI  600
FTDLTCACGR TSIPPPLPCG TMPPLCQLPC SVPQPCGHLG SHSCHFGDCP PCSVPVSKEC  660
VGGHVILRNI PCGSNNIRCN NPCGRTRQCG LHACGRTCHS PPCDTLPDFV KGYRAPCGQT  720
CGAPRSGCRH MCMAQCHPTI SCPDVRCEFP VTITCSCGRI SANVPCDVGG SNSNYNADAI  780
YEASIIQKLP APLQPVDANG QKVPLGQRKL MCDEECAKLE RKRVLADAFD ITPSLDALHF  840
GENSSFELLS DTFRRDPKWV LAVEERCKVL VLGKSKGTTH GLKIHVFCPM IKDKRDAVRL  900
IAERWKLAVN AAGWEPKRFV VISVTQKSKA PARVLGVKGT TTLNAPLPTA FDPLVDMDPR  960
LVVSFPDLPR DADISALVLR FGGECELVWL NDKNALAVFH DPARAATAMR RLDHGTVYQG  1020
AVSFVQSVGA SAVSSVTNAW GGTKDGGGLS TLRSNPWKKA VVLDPGWKED SWGDEQWAAG  1080
GSANIQPSVL KKEAPIPASL NPWNVLNQES SSSSSPTTVM RSLTSGKQAE SGDVSTRLES  1140
SSRSANVGNL DARDDSEVVD DWEKAFE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23077
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1397060.0AC139706.8 Medicago truncatula clone mth2-28n21, complete sequence.
GenBankAC1414360.0AC141436.18 Medicago truncatula chromosome 6 clone mth2-31k19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003619874.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_024641622.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K3N1670.0A0A2K3N167_TRIPR; Putative NF-X1-type zinc finger protein NFXL1-like protein (Fragment)
STRINGAES760920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1